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Table of Contents

  • Installation
  • Tutorial 1: Analyze MISAR-seq mouse brain (MB) dataset
  • Tutorial 2: Analyze spatial ATAC-RNA-seq mouse brain (MB) dataset
  • Tutorial 3: Analyze spatial-ATAC-seq mouse embryo (ME) dataset
  • Tutorial 4: Analyze spatial ATAC mouse embryo (ME) dataset
    • Integrating the three S1 slices from spatial ATAC ME dataset
    • Integrating all six slices from spatial ATAC ME dataset
  • Tutorial 5: Analyze 10x Visium dorsolateral prefrontal cortex (DLPFC) dataset
INSTINCT
  • Tutorial 4: Analyze spatial ATAC mouse embryo (ME) dataset
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Tutorial 4: Analyze spatial ATAC mouse embryo (ME) dataset

  • Integrating the three S1 slices from spatial ATAC ME dataset
  • Integrating all six slices from spatial ATAC ME dataset
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